In a study published in the Proceedings of the National Academy of Sciences of the USA (PNAS), Dr. Peter McPherson and colleagues used proteomics, the large-scale study of proteins, to identify the protein complement of clathrin-coated vesicles. These vesicles are the vehicles by which cells are able to take up nutrients, such as cholesterol, from their environment.

Defects in this uptake process have profound repercussions on cellular function and human health. For example, genetic diseases that lead to deficiencies in cholesterol uptake cause elevations in plasma cholesterol levels and early-onset coronary atherosclerosis. In the brain, problems in the uptake process involving clathrin-coated vesicles can disrupt the transmission of signals between nerve cells. This can lead to a number of disorders including defects in the ability to form new memories.

"Proteins are the workhorses in our cells," explained Dr. McPherson, Associate Professor of Neurology and Neurosurgery, and Anatomy and Cell Biology at the Montreal Neurological Institute (MNI) at McGill University. "Increasingly, we are learning that proteins don't work in isolation, but function in large arrays that form protein machines. Proteomics is exciting because it allows us to breakdown this complex machine into its component parts. We can then figure out how it is assembled, how the proteins interact with one another, and what goes wrong in disease.

"The study from Dr. McPherson and his colleagues is fundamental to our understanding of the cellular uptake process because it provides a comprehensive molecular inventory of the clathrin-coated vesicle. Its results have broad implications for a variety of fields in biology and medicine," said Dr. Pietro De Camilli, Professor of Cell Biology, Yale University School of Medicine and Investigator, Howard Hughes Medical Institute.

Dr. McPherson together with postdoctoral fellow, Dr. François Blondeau and other colleagues identified 209 proteins. "About half of the proteins we identified are already known to be associated with clathrin-coated vesicles, validating our approach," said Dr. Blondeau. "The rest are novel proteins or proteins with known function that were not previously known to be involved in this process. This identification allows us to hypothesize on how these proteins function in this essential activity of the cells.""Dr. McPherson's work is a great example of the unique "Cell Map" approach that the Montreal Proteomics Network has taken to perform proteomics experimentation", said Dr. John Bergeron, Director of the Montreal Proteomics Network. "This work allows us to build a map of the location and function of the proteins in the cell, creating a picture of interacting complexes and networks. Ultimately this map will provide a guide to understanding a large number of human diseases."

In June 2000 researchers announced the first draft version of the human genome sequence. This was important because it spelled out all of the genes that define humans and gave the instructions for making the proteins. Proteins do the functional work in the cell and are much more complex than DNA. The roughly 30,000 human genes lead to more than three hundred thousand different proteins. The ability to rapidly and globally detect proteins represents the next step in biology. Revolutions in technology of mass spectrometry which were honoured by the 2002 Nobel Prize for chemistry, have paved the way for proteomics.